Scaffold Ga0100404_1484355

Overview

Basic Information

• Taxon OID: 3300008047
• Scaffold ID: Ga0100404_1484355
• Source Dataset Name: Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 C A metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 894
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Mexico:La Bocana,Puerto Morelos
• Coordinates
  • Lat. (^o): 20.8778
  • Long. (^o): -86.8431

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017438	Metagenome / Metatranscriptome	240	Y
F100364	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100404_14843551	F017438	N/A	GDKFGLVIDMRSMVNQEMHGSGTRIVNSTDGDQLEIARKKSPQKDAGDVKCHVFVISNSQLNIMNGQMVDVQGGI*
Ga0100404_14843553	F100364	N/A	LTGITSSFRENVVATILFYTHSATTMKAIFDDYAGELSPDEYRGLISKLKERKFSYLVFALRHPYGVKLFE*