Scaffold Ga0100406_1004011

Overview

Basic Information

• Taxon OID: 3300008042
• Scaffold ID: Ga0100406_1004011
• Source Dataset Name: Coral microbial communities from Puerto Morelos, Mexico - Orbicella 8 C C metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1712
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Mexico:La Bocana,Puerto Morelos
• Coordinates
  • Lat. (^o): 20.8778
  • Long. (^o): -86.8431

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017438	Metagenome / Metatranscriptome	240	Y
F025647	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100406_10040112	F017438	GAG	MNTSKFYTEDKFGLVIDMRSMADQEMHGSGTRIVNSTDSVQLETEWKAEGVGNVKCHVFVISDSQLNLMERQLESVQF*
Ga0100406_10040114	F025647	N/A	MGEEAALAEVMNLQTEPEPGAAGGLVPTTPGPDIPALREQLAVLVSTGKAKEAIGVQLTHEQVKRLSDKEVEKFTKCYETYVGSKTAESLIDSFIFLVSKAVGMSVNIKDIDAYQKELRNDYIINKELSNLVGNLALKCGRFVAVANAALITTKHIDFSPQPRLVEELSEQNHPSRDKYGYPLDGVDEVLGSATAK*