Scaffold Ga0099808_1245909

Overview

Basic Information

• Taxon OID: 3300008035
• Scaffold ID: Ga0099808_1245909
• Source Dataset Name: Coral microbial communities from Puerto Morelos, Mexico - Orbicella T R B metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6655
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Mexico:Petempiche,Puerto Morelos
• Coordinates
  • Lat. (^o): 20.9047
  • Long. (^o): -86.8367

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001105	Metagenome / Metatranscriptome	776	Y
F053793	Metagenome / Metatranscriptome	140	Y
F100364	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099808_124590910	F001105	N/A	MSDNKLVKTVIDAVTLTGLAAGIGWAAKKVVKENFTSNPSSRFMNYMKFTVVVAGSIALKGYLEDQKILPASI*
Ga0099808_12459092	F053793	N/A	MSVPENLRATYSKKTVHAMKAEHSVNRITFTPSEASPGSTLYVSVPKLNENEVLVPGSLALVFDIDLAGGHANNFLVQNVTRALVDRLVVKF*
Ga0099808_12459096	F100364	N/A	MGISVWPLTQKLTGITASFRENVVAIVLFYTPSARTTKAIFDDYAGKLSLDEYRELISKLKERKFSYLMFALRHPYGVKLFE*