Scaffold Ga0099808_1203636

Overview

Basic Information

• Taxon OID: 3300008035
• Scaffold ID: Ga0099808_1203636
• Source Dataset Name: Coral microbial communities from Puerto Morelos, Mexico - Orbicella T R B metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3031
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Faviina → Merulinidae → Orbicella → Orbicella faveolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Mexico:Petempiche,Puerto Morelos
• Coordinates
  • Lat. (^o): 20.9047
  • Long. (^o): -86.8367

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017438	Metagenome / Metatranscriptome	240	Y
F025647	Metagenome / Metatranscriptome	200	Y
F100364	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099808_12036363	F025647	N/A	MAGEDATLEDVMNLLQTEPEPLGGPAGVLVPTAPRPDIPALREQLAVLVSTGKAKEAIGMQLTHEQVKRPSDKEVEKFTKHYETYVGSKTTESLIDSFIFLATKVVGMTVKIKDIDAYQKDLRNDYILNKELSNLAGNLALKCGRFLAAANAALITTKNIDFSPQLLEKIHPSPDEHGYPLEGVDEAPGSSTAE*
Ga0099808_12036364	F100364	N/A	LTGITSSFRENVVATILFYTHSATTMKAIFDDYAGELSPDEYRGLISKLKERKFSYLVFALRHPYGVKLIE*
Ga0099808_12036366	F017438	GGAG	MDMTKFYTGDKFGLVIDMRSMVNQEMHSSGTRIVNSTDGDQLEIARKKSPQKDAGDVKCHVFVISNSQLNIMNGQMVDVQGGI*