NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099821_1559106

Scaffold Ga0099821_1559106


Overview

Basic Information
Taxon OID3300008030 Open in IMG/M
Scaffold IDGa0099821_1559106 Open in IMG/M
Source Dataset NameCoral microbial communities from Puerto Morelos, Mexico - Siderastrea T C metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)688
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location NameMexico:El Islote,Puerto Morelos
CoordinatesLat. (o)21.0853Long. (o)-87.0617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035625Metagenome / Metatranscriptome171Y
F043219Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0099821_15591061F043219GGAMKDLYAYYHKKHFGYEKLYRGFRRKNFVCNLFAGKLIIIAAVAGGITLNSVVIATLTGIGLILKAVASLKYDKKTEQANFARIEYQKVLDEIRFYLRGEAFDKKVFLDRYDR*
Ga0099821_15591062F035625N/AMIALFAAICYWFFELLTPPEKKQIRFITRDCVSKIMSPTRDKPGYPISGQDVVA*

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