Scaffold Ga0099809_11069203

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0099809_11069203

Scaffold Ga0099809_11069203

Overview

Basic Information
Taxon OID	3300008013 Open in IMG/M
Scaffold ID	Ga0099809_11069203 Open in IMG/M
Source Dataset Name	Coral microbial communities from Puerto Morelos, Mexico - Orbicella T R C metatranscriptome (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2940
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location
Location Name	Mexico:Petempiche,Puerto Morelos
Coordinates	Lat. (^o)	20.9047	Long. (^o)	-86.8367	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001193	Metagenome / Metatranscriptome	751	Y
F002131	Metagenome / Metatranscriptome	590	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099809_110692034	F001193	N/A	MIGQMAIALTLPGFNDLGHSVTPVFLLLDHFLYRFSTFSEKMKKIY*
Ga0099809_110692035	F002131	N/A	MSYLCQKCKKKLGVPVFVSEVKRVENYPDFEKLVHAIQHGLQGFIVKNIEGESTEANNLSHIL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.