Scaffold Ga0100396

Basic Information
Taxon OID	3300008011 Open in IMG/M
Scaffold ID	Ga0100396_1016309 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008011 Open in IMG/M

Scaffold ID

Ga0100396_1016309 Open in IMG/M

Source Dataset Name

Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4276
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4276

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured archaeal virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Utah

Coordinates

Lat. (^o)

38.9383

Long. (^o)

-110.1342

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012423	Metagenome / Metatranscriptome	280	Y
F019951	Metagenome / Metatranscriptome	226	N
F026802	Metagenome / Metatranscriptome	196	N
F039475	Metagenome / Metatranscriptome	163	N
F044301	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100396_10163092	F044301	N/A	MAVTKEIAVGKYKDKISSDSFNKGVSAVTKSPAQQAVAQKDAFTKNTIAGKEVLIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNATKTLTAGKNAHAAVANMKKGTLSDSYERYLAAQKAVVAVYA*
Ga0100396_10163094	F019951	N/A	MTILFKNFRINVSGNNVKCEANNKLYVQKGQKIILHAIQIAPELNTADENVFIMLYRDQEQLAGEGIYHAVIDDYTHTIEFDADAVEGQTFVTKAWGPNAKIIHGVYIYEITS*
Ga0100396_10163095	F026802	N/A	MYYYVPFSRNLTQGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLWGQISISNIGTTKEYLLKNGIYAIFQRGTDGFVLNDWCQPAFIPLDHDIRADHQILLETFTWGANFISVRGHFVYSK*
Ga0100396_10163098	F039475	GAG	MEKLNIFIYTKDEDYNPLGSVQLEFFQLDNNGNETYIGKSISGDDGRIEVSKTALGGEGARIRVRNAKRLSGEDIVQTSDGIYSTFIVSNDETVQEVEIVFQIKKKHNIHINVMWK*
Ga0100396_10163099	F012423	N/A	MAVTKYNGDNCVIAIGISNDADSTAQNYGLSLCLKDEDGDEYTLGIIGVIGTILTGGFSKITDTNKIKKNRFYFEKATTYNYTGTFPFPEMKEGKIYGQLGVYDGTDEDSVRKAETTYDYVYNFEKKKFSMSVSVNWK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0100396_1016309

Overview

Ecosystem & Geography

Associated Families

Sequences