Scaffold Ga0099819_1146893

Overview

Basic Information

• Taxon OID: 3300008006
• Scaffold ID: Ga0099819_1146893
• Source Dataset Name: Coral microbial communities from Puerto Morelos, Mexico - Siderastrea T A metatranscriptome (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6111
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral → Coral Microbial Communities From Various Locations To Study Host-Microbial Communication

Source Dataset Sampling Location

• Location Name: Mexico:El Islote,Puerto Morelos
• Coordinates
  • Lat. (^o): 21.0853
  • Long. (^o): -87.0617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001105	Metagenome / Metatranscriptome	776	Y
F003767	Metagenome / Metatranscriptome	469	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099819_11468936	F001105	N/A	MSDNKLVKTITDAATLTGLAAGIGWITKKVVKENFTSDPSSSAMNYVKFTAVMAGSIALKQYLEDQKILPSSI*
Ga0099819_11468937	F003767	N/A	MASIAIMVGGAVLNAAAFIGGNYLARALGRGDKASLDEKVRHDKALEEYQAAYAKYTRDRTKLLDWIATNSKIKEEANQNFTNTDYAFKLYNQAHPDKQVIPPKEPKFSEFYQPSEQQKNGELIFVGAGALALGYAAFRFL*