NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105163_1017149

Scaffold Ga0105163_1017149


Overview

Basic Information
Taxon OID3300007999 Open in IMG/M
Scaffold IDGa0105163_1017149 Open in IMG/M
Source Dataset NameHot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 110809A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1830
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameBaoshan, Yunnan, China
CoordinatesLat. (o)25.4413Long. (o)98.46Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079345Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0105163_10171492F079345GGAGGMLSKALNLELEGLSVLQRKLLLQLLHRRYPHYWDKFTSHEYTWQSRKEALEEFLQNHQTELVKEFVRAGLHGNGWKTTRRSGARVQG*

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