NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111053_100003

Scaffold Ga0111053_100003


Overview

Basic Information
Taxon OID3300007997 Open in IMG/M
Scaffold IDGa0111053_100003 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 764083206 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)303979
Total Scaffold Genes323 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (14.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057446Metagenome136N
F064818Metagenome128N
F064819Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0111053_100003154F064819N/AMILKDNQGKDRIKFSDIVRLNKEEPVFIKMKVRISTETIVSEENLDIERSDLEDLMRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSVNFSFQTDLNGIVTFSKEISQEIEKCK*
Ga0111053_10000327F057446AGAAGMNSISFGKTTITSYPEYFEIADNKKTNKLLCLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0111053_10000364F064818N/AMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFTQNSFQLSHYYYGFPIMTNNDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNIVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*

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