Scaffold Ga0105748_10006695

Overview

Basic Information

• Taxon OID: 3300007992
• Scaffold ID: Ga0105748_10006695
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4354
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.235
  • Long. (^o): -123.9123
  • Depth (m): 10.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105748_100066951	F032309	N/A	MRNETQEFFKYTQSLPFKDITHFWDIPYKEMLDEIRLVNEDYWRRPFDADNNQIDRMKLDDKESVNHYPGLEGALIEAHGWKSLCFLNETGDSKDQIKRFPPIFNTAGDYKATLKYFLDNRKWTNVSDFSPTLVKFFKEVIGKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLGGEQVHMFDMLNTFNLCLNHVQSCYSVFDNKVMPAYNGCLRWTNVGKKHWVVNMNRNPQYQIIWQGIYKKDFRRLVMENK*
Ga0105748_100066952	F033761	GGAG	MTITNNHTYFVLDTVFQNRHKELFDFFEGQGADIEINEDFAGLKTILTSKDKDDYPYDFDPAFESKLDNATGFVLHLKIDGEVVATYAAKKLAIPVFVEAMKEKFSGTYEDVSDMSGQSAYSSCQWVSKDHRGKKLGRILDHLKKHICFDLMKCTNNYAIHKEALADYHTEHLGYNTTQKLALIPNGDVGGAGEVIDKIYNLTYTTATEWTNKQSDIKALYS*