Scaffold Ga0100381_1187485

Overview

Basic Information

• Taxon OID: 3300007985
• Scaffold ID: Ga0100381_1187485
• Source Dataset Name: Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1045
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Desantisbacteria → Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000449	Metagenome / Metatranscriptome	1126	Y
F062440	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100381_11874852	F062440	AGG	MENIKMSPTKGDKAEVLGREILKKIYDIGHLAYKLKRDVNDIYSIILSRPGAHISAEGHKAELWTAAFDDFSHRWKDLENKRYEVESLVNLMYDLVKQEDEKRWGKIKLSIK*
Ga0100381_11874853	F000449	N/A	MKNKKAGEGDIPSPDLDQEYELRTSAPQEEMERYYLKKKAALKRKIRQINKKIKKNIYNPYTGDDGKYKNVPD*