Scaffold Ga0102941_1091139

Overview

Basic Information

• Taxon OID: 3300007983
• Scaffold ID: Ga0102941_1091139
• Source Dataset Name: Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_C_D2_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1103
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4965
  • Long. (^o): -122.133
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008719	Metagenome / Metatranscriptome	329	Y
F097996	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102941_10911392	F097996	GGAG	MAINRDGMHPRYLGFQVDWPVFVKMPFSADGKHWKSREHFNWAERELEMKDVASLYAQGFVYHNTELAKVNKVGDRLGEMNSGDLYRLVVQLNGIVKERTTTAKEYNDKRCKQSKIEDKQRGLIRRFLNRNPWVTEDFYRLRDHILGE*
Ga0102941_10911393	F008719	N/A	AWNNIPGANNLGVSVESFSDDALKRQQVAEHIQVKMAYDMKVVGADLGGFINSAIS*