Scaffold Ga0102924_1018213

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1018213
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5274
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_10182135	F004186	AGGTGG	VPVRRWLLLIVVAALTAACGVPTPAAPSAQEVLAKPQQSDLKDAHFTVTGKIADNGVTVELKGDGALAYKPKPAGRFKFTTNVGGQAVTIQEISLGGTNYGLTPASPKWVASKDPSGIDPNAFAGASDQKYVGEENLPQGKAWHATAKDKGGNAFDAYIREKDGYPIKYVETQSGGQNITLTFDKYNSGEQITAPPADQIQQG*
Ga0102924_10182136	F004003	GGA	MVSVGVLAACGGPGSPLGPPSAKDILSKPLHSNLKDAHFTVAGTFVNPTPGAPSVNVQGDGALVYKSPGAGRLKLETTVAGQKVTYQDISLNGTDYILIAPGNGKWTAKKTNSGLAPESFAGASDFKYVGEENLSNGKAWHAKAKDTEGNQFEGWIRESDGYPLKYAETQQGNALVLSFDKYNAGESITAPPASQVVQD*
Ga0102924_10182137	F004349	AGGA	VKANTWLVLATSALVVTGCGNSVAGPAKPPTAQEILAKPDTANVKDGHFTLVAHIVSSGVTFDATGDGIIVVKPQQASRFTMQTTIAGQSLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAVYLGEETLSQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFNRFNTGQTVSAPPASDIQQ*
Ga0102924_10182138	F006952	N/A	PALLVAPIREADRRDQQRRQARLAEPRRLTDHLLGQLEELNLDGVATVPEGYQSALAELREQLEGLGRIRPRLIDRLQPGMRTAELIDTVFIIQEIISPPGFLSGNLAFDDTEID*