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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007982 Open in IMG/M |
| Scaffold ID | Ga0102924_1006328 Open in IMG/M |
| Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11150 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029198 | Metagenome | 189 | Y |
| F055156 | Metagenome / Metatranscriptome | 139 | Y |
| F061167 | Metagenome / Metatranscriptome | 132 | Y |
| F097840 | Metagenome | 104 | Y |
| F105952 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0102924_100632810 | F105952 | GGAGG | VSTRVGATNKKRADSIGSAGPFFRDKLDSRVTVLQIERALAELGIHAKLSDIVAKARFIEDGIIQSPSCRKRGARGE* |
| Ga0102924_100632812 | F097840 | N/A | MLLKFSDLPRCAFGELSAMTQLAVRTVMQAAAVLKHKSDEGVEMYSTTSLNGVPTIQRDGHNILGVWDQNWDFANEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVHHA* |
| Ga0102924_100632814 | F029198 | GAGG | MDSNANSRAVRVHGEVIVLHCWACGTAHCVNLELSVPGELAHMVCSNRNCGMSMFLVNELVVDDKSRKQMTKTELNASVTYSRFWK* |
| Ga0102924_100632816 | F055156 | GAGG | MFRAEIQWLASGPTLKLEGKLVTDWAEQAKRLVTKDVLPKDLIVDLTELSFVDSVGEQLLNWLASVGAVFI |
| Ga0102924_10063282 | F061167 | N/A | MRRQIFDAIVIDCAQDTLDMQHFTAKAQGLQPSLAVFLADEWGDELASGLEELGHLLTMLEDDECALLV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |