Scaffold Ga0102924_1000258

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000258
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66667
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (65.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F000673	Metagenome / Metatranscriptome	944	Y
F008273	Metagenome / Metatranscriptome	336	Y
F076303	Metagenome / Metatranscriptome	118	Y
F080467	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_100025812	F000321	GGA	MLSCGHPSPKTVGIVAKRRSANFAVYNVRLLSALDKLLRDKPRYLGELSTSINDALLAVDLNTVELVNLQSRQKQTGRETQVVILRRLRKRIHHVAQKRKCSMNQLVNSALLAYYSKTGEGKLKRPTKGQGASMRSYDTMSDLERRELNQMLSGLSAVQPVSADVEEPNGTYYEYDRNLKATVKVTPDGERTPVEGFETQFERAPQKGAYKTTHEGMTP*
Ga0102924_100025817	F076303	GGA	MAISILVLVFVVMFVGCKKAEPPSPIVKMMEDAGSGEVAKTSDDGITRWLDQHKAVLLEVKKKCIEVRASNPPANWSATTEGRVCANAFLLDSGIPLKTGDKKY*
Ga0102924_100025835	F000673	AGGAG	VSREPFPRSFRYPSAELREQVRAAVRERGFRSEQAFLIAACEHEIRQGANTEATTQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKGMVADE*
Ga0102924_100025840	F008273	AGGAGG	MNSKNAATRQDVIENSVDHQISTLANSTASPRQLETLLNSELDHDLIAWPRQYLETYLDSDATGRVPLDETQLQDILEAAFDRDATLARDYLEELNGERGPKTLGDTALQIATAHTKGREAEYELLFDPVDSQDLKYLIDKLDVRAWEKQNGQTIPALKTQPDPERLETTTSVATHQPGSGEVDLHDKTTGTDVRKLLGGGELPVGLQSALRQMAPDVRIEKAQTDSGTYRGGIIGETEKNLIQQITSHSAVVHRKDLLDMIPAVGENVRIAYSNENARVLPVKERSKTQELGR*
Ga0102924_100025854	F080467	N/A	MLSEKPLQSVSVKRLSLDAIDVENDAELDALTAQVLAAGTKIAESERAEMIRKGIIDEHGNLLKTELPEDMRKDADRDFGG*