Scaffold Ga0102924_1000129

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000129
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89339
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (58.51%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001959	Metagenome / Metatranscriptome	611	Y
F020593	Metagenome / Metatranscriptome	223	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_100012933	F001959	GGAGG	MKNIDSLFAAYMAAWAIFFVFYLTVALRTAAIRRDLDRLKNSVARGK*
Ga0102924_100012946	F000624	N/A	MPIHWSTVLAALVPVGVQFVMFLRWLHRRMRNDEITRAFVRDIATNHLPHIYSALRQIAEEKGIVLHEPPLVRFIDLQGNRHRD*
Ga0102924_100012948	F000703	GGCGG	MQVREYRESDLAALRAIHAAQGFEYPLPDLSNPLFITKLILSKAPEDNAAVESESPQKKIIGAALLRLTAEAYLLLDPKAGTPLERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGKRIAQLGWNRDDTWTPYCKRIND*
Ga0102924_100012957	F000696	GGA	VRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLLRNAQEAIAYATAALAGWARGSPLAEKWDDAATDAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF*
Ga0102924_100012958	F000739	N/A	MDQMKRLEIWLRGVLAAAISGGAGGVLTGFAAVGIDPQHFNLQTGTGATLRIAAAAALINAVIGVAAYLQKSPLPTD*
Ga0102924_100012966	F000885	GGA	MATTNTTSTASNAHLEFIGMIVEIAGVASVVAGVVLSLHHWPAAVALLGGGVAYLIGKKLRAS*
Ga0102924_100012974	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEELRHRCGQELLRRGMFPPRKYFRNES*
Ga0102924_100012977	F085961	GGAGG	MNARSSQPPWEFLLSASRNSLQSFELSRLAHAANLRKEISALIDQWMEENAAALLARWLLEQRERSTRAPDLLSAPESGKNGAHAASDNFLADRAASQPVKGGPS*
Ga0102924_100012980	F000536	N/A	MVELTPQQMQALERLFEAGFRPIAISPYESALCVRRGECAAVLSPVPNGGLKLLASPSYMVAGNLSVRLKRGPAEVFVWKKTELTATPERLGELESFRRELTEILDLPQTQ*
Ga0102924_100012983	F020593	GGAG	MRAEGYTVDASTKGCLAIVPQGFPVGQRLRLINLINKNSCEAVLIWRGHEGRTGWELGLELLEASMEFWGLDF*