Scaffold Ga0102924_1000047

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000047
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133124
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010282	Metagenome / Metatranscriptome	306	Y
F011054	Metagenome / Metatranscriptome	296	Y
F034671	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_10000472	F011054	GGA	MATVERAEEKARQIAMEQELHAIFAMQIPMAQGDQVFMGAA*
Ga0102924_100004780	F034671	GGA	MVNNEAVNCERVWHEISNYLEGDGDPTLRAAMDEHFRTCQRCSSVLEGTRNVIRLYGDERMMEAPSGFGRRLERRIAQNVRVTRGRWSVWSTWLVPVAALVLIAGGLRVANSLTAGPELKSEHAQPGQGIPPDMMVVVTSDAKVFHVAGCDFIHNKQTERTLTAKEAIREGYVPCLRCMREYLHTAATGHSTLGAEADAHIDTEEGTAHGGGE*
Ga0102924_100004789	F010282	GAG	MMVVVFPVALFGADQPGAMLYSHGTALVNGNSIAKSSALFSGDLVQTNSDSVANINATGSSVMVLNESLVQYEGTALRLEHGGVTVSTSRLLTTRAGEVVVTPVSNVWTEFEVRDVDGRVQIAARKGNLTISDATGTTTLAEGQQTTRDDAQSQNNRKRRRDVAPGAATSAAGAVFDSPITIGVAGGIVIGGTIWALAHSDDPLSPAVPK*