Scaffold Ga0102924_1000034

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000034
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 147317
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000508	Metagenome / Metatranscriptome	1069	Y
F001031	Metagenome / Metatranscriptome	800	Y
F006637	Metagenome / Metatranscriptome	368	Y
F023651	Metagenome / Metatranscriptome	209	Y
F076413	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_1000034134	F023651	AGGGGG	MSRKDAVVLAARTLAALLTVWALTDVSYLPERLHSFVYYLSQEAPTSSASGEHFRHYYLIGLGFLIVRIVGYSPMARWLYKSGPEVEELLLPANLPHNDRAADIR*
Ga0102924_1000034138	F000508	AGGGGG	MANLNKVVSSLRSEYSRLEKEMGRVGKALDALGHAGGKTLKRTGRTLSKEARKRIADAQRLRWAKVRKQAAKLAKS*
Ga0102924_100003422	F006637	N/A	MHDVDTPSFLNLSAWRELICSKCKARLEMKPPRSFLLGPLIAPLFVLARRGRLLEIIAFVYMFATILLVLLESLRPKVQLRKKPLPTPEVRLNIDGPSK*
Ga0102924_10000343	F076413	AGGAGG	MRSLKVLGMFMCVLALAAIAVAGPNSMGVRDVNKVTFNAPMRVGAVVLPAGDYVVRHTMEGQDHVMVFQRAHSKDEFKVKCTLVPLPQKADKSQIVYDSNPGSERVLQELEFVGDSAKHVF*
Ga0102924_100003478	F001031	GAG	MKPAIDLASGVSHDPYQQTVCCLRCEQKLQRYQLWRSSPVPGNSGHAILSCPRCGHVEFVSDSSPLLQNLELIAVDAGDGD*