Scaffold Ga0102924_1000017

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000017
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 194735
• Total Scaffold Genes: 179
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 110 (61.45%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000749	Metagenome / Metatranscriptome	908	Y
F002358	Metagenome / Metatranscriptome	567	Y
F004485	Metagenome / Metatranscriptome	436	Y
F007325	Metagenome / Metatranscriptome	353	Y
F025531	Metagenome / Metatranscriptome	201	Y
F036390	Metagenome / Metatranscriptome	170	Y
F047229	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_1000017129	F004485	AGGAGG	MRNHELYSMRAANAAQLCRLWSSHVDALERHLSASRWALAALTVLLIAYPVTRILIPAILHRIVPDVVWTVLNLI*
Ga0102924_100001715	F047229	AGGAG	MAYEPSLKVMQALLDPEARNALSLPLAVLITGALSQVETTIELTNRVCDSVFRRSSKTATDSGIGVVKRQTI*
Ga0102924_1000017169	F007325	GAG	MVGMRYRFRVWSTLIPLALAAVVMARSNEPTVEELKARVASTSVRDRPHLCVEIAQKQLTEADKLYGASEFEKGQAALTDVVAFSELARDYAIQSHKYQKQTEIATRNMTRKLNDMLHSLGGPDQAPVRDAINRLQRVRDDLLASMFPKGAK*
Ga0102924_100001761	F002358	AGG	MPAIVSDAKVSKNQAGEPDQDSDKVSALVELLRNRSYVEIRQRMYDSAPGSPWWTACRAELDLRNGQQLGEASLAMSRTSDKMRASLQHFEQLADTLQQSTKDVADLLRGTQEAGRRLEIAVYVTIGISLVQFFNLIFEIFRRR*
Ga0102924_100001762	F036390	GAGG	MPPIEILSVEEASESATPTTVPARDRVPARRRFYALSFKDHVRLLLPFLLAGAVGVLARVRYPYWWPANELVYFAADALIVAMILGVAFDLFSAKLLVERVSDGLAQTLVGRGLPIEMQGLVRDVVSTDLVRDHYVKSYAFSTPEDGHVQVDVEVRYEIRNYSEAVRDYAPELTTETFFQPEFRFLEYGIAGRKIYTFSDENLASKVEIEDTLGVTRVPRSALPALSLKPVRAGEKAACQVTWRYGLTVPEQYCDITDLDEATLGATLHVETLPDELEFVSGFDASLHHEAGSQSWYFERAFIGGQHLRAWWFRRRGSARPRPRP*
Ga0102924_100001765	F025531	N/A	MQVAMNSKDNQDPDRDVRERIVNLMQSIEKGPKKQIPAEELQKLKSAASRLDEMLKAAANADQQALKSAARRLDQLLSDIRAGKDVTSSLARRKNSGT*
Ga0102924_100001774	F000749	AGGAG	MMNQGVSPKPAPNVTIRVSGKLFEGHLAYLEQLVHSAGECSLWPLLNLSRLDELDHAALSYLAHGENREFGIVSCPNFIRERMDDEHRRSAA*