Scaffold Ga0102924_1000011

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000011
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 238529
• Total Scaffold Genes: 207
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 137 (66.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000159	Metagenome / Metatranscriptome	1863	Y
F000168	Metagenome / Metatranscriptome	1799	Y
F001069	Metagenome / Metatranscriptome	787	Y
F008313	Metagenome / Metatranscriptome	335	Y
F015365	Metagenome / Metatranscriptome	255	Y
F015894	Metagenome / Metatranscriptome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_100001112	F000168	AGAAG	MVPGMAGEKQIMTDAPAKLVQRLTEGLQRERIVPRFVDSYVVEHGRHALQVHASLYRDLLELLQREALLAMTGRALDIIYSEPLPSGRTKPQPMLRKDAAAFRRKFLAALTRQQKWSAGDALDFQTDLQMYEDLLARNSSARRSRKPFEAANHPFVDRCAFLLDSSFLEKARIAASRALNDLENLAAQITGAVLHGQETAPARLKR*
Ga0102924_1000011124	F015365	N/A	MRARSLILAAGLLPALATTSVAQDSATPPPPRTEAEKTALLDRVVANEKKSDEAMNLYERVERVETRKKAGDPPSFEIRVSRVVPAGTGVDHIPIGPDGKPADPDAYHEELLKLERALSWASDDGHAQQDAYEKIARKQKERDEIIDATRTAFLYTFISTETRAGRVLYKYSMAPNPAYKPTSRTTAVLAKVHGFVWIDPVAGQIARVEGEITEDISIGLVLAKVYKGSRFLQERYEIQPGVWMPSFSQYDFDGRKFFSTISIHERTFYTQFHRIGPPKEALAEIRAELGKPGAAVSDP*
Ga0102924_1000011132	F001069	GGAG	MQYLPGFTVQCINPLCEARGHWLRADATGPISDDGRCPCCGDFLRNVPPPLSPRFRMRPRPLTARPPLRPRPR*
Ga0102924_1000011170	F008313	N/A	MIWLTTANQPLSEALHAATGVEAENIGPNDFGALLGLCDELSPRIKKTTPWLREVRGYYSIVAKLENACHSIQPAVAAWAASEMKTCSRYVAVVLDQNLSLELDTRAAVRSI*
Ga0102924_1000011200	F000159	AGGA	MKFNSILRSAALVAALACTLPLLAKPITKTINITRSAKIGKADLQAGEYRLMIDGNKATVQRGNQVLAESEGRWEDRATKSSNDSVLIGENGQVKEVRFSGKARVFVFSE*
Ga0102924_100001174	F015894	N/A	MWMMIALFVGLGLLLAGGLFVAGRVVRSLGLSAARAKDTVRTPEGTFRLQKEAEVGPGLPVYPRASLVVPDDDAAAAAIKQAQNGIETSIYHTTDLRDYVDTWYTGHLSPEFTRHSPGDKSGPTILSDAHVSDEDITFVAERDQMVRVVSLSPDSGGTRISLIRFNKSSPAADASPTPVQPAPAQQDPAQ*