Scaffold Ga0102924_1000001

Overview

Basic Information

• Taxon OID: 3300007982
• Scaffold ID: Ga0102924_1000001
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 358030
• Total Scaffold Genes: 300
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 205 (68.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000169	Metagenome / Metatranscriptome	1788	Y
F000438	Metagenome / Metatranscriptome	1143	Y
F001146	Metagenome / Metatranscriptome	765	Y
F018213	Metagenome / Metatranscriptome	236	Y
F023656	Metagenome / Metatranscriptome	209	Y
F026416	Metagenome / Metatranscriptome	198	Y
F055042	Metagenome / Metatranscriptome	139	Y
F058326	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102924_1000001104	F000438	GAG	MGINMDKFEEFGRRIDEELTRLRRYIDEEVAPETEKRTAQFLREVSEKLTQAASKLESRNSARAERDSQKPPSQS*
Ga0102924_1000001144	F018213	GAGG	MIAMLHFATLVVVTIFAAAAAFAFDWMLLRAIFVLMQPVTARRAPAPAHLAHLAHGTTQLARPYASQR*
Ga0102924_1000001146	F000169	AGGAGG	MAKKSNLTKVAARIGGAFGKADRKAHKVVEAGSLAKEELLAISKQVGALKRQLEKTTKRLKRALN*
Ga0102924_1000001205	F023656	AGAAGG	MNHKTSKKESKTFVEEFRERLNREDLERRWKLEALDCLFTEVEDHPESFHRLWIHPLVAAGLTLESALALLIEGRFLPN*
Ga0102924_1000001264	F026416	AGG	MKTGRWLTWIGSVILFLTGIGHGSKFAQLQGMIQASSIKPPLDGIARACWLVFSGEMAAIAVIATVASGMERGGRIVLICAATMILDGALLFRFLGPFIGVYVTAAVAILFLAGGWMQAKAAA*
Ga0102924_100000128	F055042	AGGGGG	MKHFSTEEWVDFVNHLVTTGQKEEMQKHLATDCKRCKETVSLWQKVRKTAALEASYQPSTDTVRLAKAAFAVSGLAQTRKESPSLIEVLFDSFLQPAVAGARSVVIGTRQMLYRADPYQIDIQIEPKPGGNRIVITGQLLDLSNPGVIGSDIQVTMSNHRGNSVVVAANQFGEFSGEIENSGDLELSIPGHGEKPIVISLRNALGNLPGGKP*
Ga0102924_100000155	F001146	AGGGGG	MFQQVGMNNRGMMKIKDSNRKWMWWFLGVVLALQLYFVRELLAAFAIFAVGFAAIAFVVMSLYMMQKAWEVGVQRVADSQHPVVDMARRSVNAVEDLARRPLRRPGSAAAR*
Ga0102924_100000161	F058326	AGGA	MNIAVLPVLALLLSPVAVAQTPAAIPPDLKKDIQIDIQSPIKTEGAVPVAAEPHHAHVFQNGFVQVYNVTVPPLDATLLYRDDLPYLYLILGATEIVNAVEGKPPVQMTMEDGATRYSPGGIAQVIRTDAGISFHNITVVLAHPQASPHNLGDKGNDRPLGSCPQSNATPTQNDQIPFEQVLPCFETSELRMDEVKVEGGKDYVQASPETAALLIAMSNADLDVSVGGEHAAFLHAGDVLWLPPGLARKVGDFLGTESQFLLISFKDSGTAPGK*