Scaffold Ga0105747_1035836

Overview

Basic Information

• Taxon OID: 3300007974
• Scaffold ID: Ga0105747_1035836
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1421
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9163
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F033037	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105747_10358363	F001460	GAGG	MLGYTESDLNRMINAVHDSKLFYLRYPSDLMDKAPLRKDLEDVVSFLQGLWAEGYFDHTD
Ga0105747_10358365	F000263	N/A	MKTKGYKMNAEDIGLPPHLQRMVNAGVTGLDIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAQGRLDTLVELYKLTYDLSFAIGARDEASR*
Ga0105747_10358366	F033037	GGAG	MKPADKDKLNECLKILDTTDLGLSLVWLWTWSTINNIFEDETYRQNCTI