Scaffold Ga0105747_1002731

Overview

Basic Information

• Taxon OID: 3300007974
• Scaffold ID: Ga0105747_1002731
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4457
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9163
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071220	Metagenome / Metatranscriptome	122	N
F073094	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105747_10027311	F071220	AGGA	MTNKVKGVVDTVVAIRTTTTTIKNDTKVIALDETNAKELLEKFEANKADKATLEAQYKSLQAEIYALLGYKKVGDKWIGVADEGTIDGVSVVKVGTQTRTNFDKEKFLQENPELLPLVEAFTSESTNTVLKTTR*
Ga0105747_100273113	F073094	GGA	MTTIAAIQGENWAAIGYDSRLTEDNSKIYTLPKDNGKVSKNGPYIIGAAGDMRAINILTHVFKPPTVSPNLYGAKLDKFMSSVFIQEMKRCFEENSYSKDGEHDSQVMVAVNGTIYEI