Scaffold Ga0105746_1036365

Overview

Basic Information

• Taxon OID: 3300007973
• Scaffold ID: Ga0105746_1036365
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1515
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F043818	Metagenome / Metatranscriptome	155	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10363652	F061577	N/A	MPRPKTEMTKSGKTIAVRATMSEWNEFRRLGGTKWLRQLLATSIDKHKKVKINVDKQ*
Ga0105746_10363653	F042184	AGG	MELDIEFYDLDIEIKAWVEWEYDPDYSPNEGVYDKFIWVVYLQVGNTRIDITDELTPRDSKKIEEQIEESIDDSL*
Ga0105746_10363654	F015970	AGGAG	MTAFNKAKWEAYQGLNDDDIIDAIDGSEAIPLAIKSGDWEYAFQFIKERIDNKMQRRAEFYLYSKTKTPSIDDDDELRTLRTLWLKNEYRGDKDET*
Ga0105746_10363655	F043818	GGAG	MKLKNTIATILEESQDEYFCQFCTKRKVATLPICSCSGNWFRLSDFDFDTQFSIAQTIFNLQKGVPDKKTS*