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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007973 Open in IMG/M |
| Scaffold ID | Ga0105746_1019503 Open in IMG/M |
| Source Dataset Name | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Oregon State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2001 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Oregon, USA | |||||||
| Coordinates | Lat. (o) | 46.2357 | Long. (o) | -123.9153 | Alt. (m) | Depth (m) | 1.2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002099 | Metagenome / Metatranscriptome | 593 | Y |
| F002933 | Metagenome / Metatranscriptome | 519 | Y |
| F004432 | Metagenome / Metatranscriptome | 438 | Y |
| F058793 | Metagenome / Metatranscriptome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105746_10195032 | F058793 | N/A | MDPTQAQLNSHVDVCALRYEMLCARIKRLENIMLGVSGIMLTSMAGIIFTSLK* |
| Ga0105746_10195033 | F004432 | N/A | MVTAKKTTKAPAKVAPVKRSRPKPAPTSQVNVTLAAPAAPPKSEAKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITTQDKMPQLAKQEQLIMPARSLMKDVDGIVLLVHKANLATNSRTTVLALNADGSREKAIEGTVTSLFNASADRNAAMVAMLNNEVLCEEFNPSSKVGEWGIKQGVKFMCRGSIPPDPGKFAGYIAIGFKDKPEDIGALKTRINLAASDMSED* |
| Ga0105746_10195034 | F002099 | AGAAG | MRWLVLLLLLGLVGATAKDGCYVREFYSIAWGVHDPTERHKQMAQWLTKHQQLCKSSDFRVIWNNMAEWAGTSDSHHLRALVIHGYKDALEREKK* |
| Ga0105746_10195035 | F002933 | GAGG | MIPPLYKWYPMVEAPEYPTRTDALERRAERLYEEYKQALKMHKMEIKIDELEFELYVKKAERNQLSLEIFTNRKVDFYV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |