Scaffold Ga0105746_1015348

Overview

Basic Information

• Taxon OID: 3300007973
• Scaffold ID: Ga0105746_1015348
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2223
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F001781	Metagenome / Metatranscriptome	635	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10153481	F000868	N/A	SFLENENQMVIDAELQTIAEQLLNDWIYENLNEGQFYADWRIADMSDSNYLKGRFNQFYDLNKGDEYYLEWDEEK*
Ga0105746_10153483	F047059	AGTAG	MKIHLISLEQDLEDARNNEPLNEDEYWESDSFYMGAIDATKHLLSVATDIMNSSNERYE*
Ga0105746_10153485	F001781	GGAG	MKPDDKDKLNKCLEILDTTDLGLSLVWLWTWSTIKQTLESNDWEPQVTEDQMWDNLCEAVSAGQGFSLEYGAEQHHDEVIEWMLDRDYIMDPLDEEEEEDATD*