Scaffold Ga0105746

Basic Information
Taxon OID	3300007973 Open in IMG/M
Scaffold ID	Ga0105746_1015197 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007973 Open in IMG/M

Scaffold ID

Ga0105746_1015197 Open in IMG/M

Source Dataset Name

Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2233
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2233

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2357	Long. (^o)	-123.9153	Alt. (m)	Depth (m)	1.2
Location on Map

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Source Dataset Sampling Location

Location Name

Oregon, USA

Coordinates

Lat. (^o)

46.2357

Long. (^o)

-123.9153

Alt. (m)

Depth (m)

1.2

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10151971	F023575	N/A	MAVSKGLALVYGARGTIKLYTINDAGALVALTTGTITTMESYDITHEADVEQIKNSAGEVVAQVSANERISLNVTFIPSADTFANAKIAASLPKVNGYAEIASSDGPTVGGVSLDGTYVYSGGGSIKMTNSGKAMVTITVTKYPSLAGSAAVFTLATP*
Ga0105746_10151972	F010835	GGA	MNGVALRTERALVDWLAAQDWSASPLGTPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAEESNPSGGFVAYFATPTDFGMNDTSERSRTFSRSMRIFAAANAITT*
Ga0105746_10151973	F013879	N/A	MMPKITVDKSRFDRAWSRYVLLTGRSMADVVNSRTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGARKKDKKTGKFLGRSRELRLVHLIAQARNKKAGNEGLYGPTMREAAASLRRRAAGSVGYLKSCVVKAIKKLSPSFTQFGGTRRARKGSAGVKIIAGNQALINLANQYGLPKENVSVHRGSSAYAYKAKTGQHTYSMVKMNLGLADNQMGKVASIYAKAMNQAYNDEAKELEDHIKAKLEEVSGVLEENGITVQ*
Ga0105746_10151974	F007260	N/A	VRCLPAAITDANSVIAGGFQDNVQARILVKFSDWRLADSTLVTVDASVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGRQMRIMSAKRDGSGAYYALELGAKTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105746_1015197

Overview

Ecosystem & Geography

Associated Families

Sequences