Scaffold Ga0105746_1004569

Overview

Basic Information

• Taxon OID: 3300007973
• Scaffold ID: Ga0105746_1004569
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3794
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F006181	Metagenome / Metatranscriptome	379	Y
F019614	Metagenome / Metatranscriptome	228	N
F029411	Metagenome / Metatranscriptome	188	Y
F040616	Metagenome / Metatranscriptome	161	N
F071981	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105746_10045692	F029411	N/A	MNVDFSTIDPQNELSDLYTPDYREEALNEDRYLEMAYEDRFEMPCMEDYQ*
Ga0105746_10045693	F005293	AGGA	MNVDSVPFIPTRDDLIGYISDTYKEINGFRPRPTWSELTYNQLDQWGRQLAAEAVTHRKQEVIRNRIARGLRRAQQRAWVEKKRGYFTPSTFTLGNVVNF*
Ga0105746_10045696	F040616	N/A	MDPEDIAYEDSVSSDTAGWPGDGSGEDDFADYNQNEAGDYSNE*
Ga0105746_10045697	F071981	N/A	MKITIEFDTDNAAFEDNQFAEVDRILKLVGEYAYEHMLYPNYQLDRNIKKGHKIVDTNGNTIGKFKIVI*
Ga0105746_10045698	F019614	AGGA	MNTASIASNKIKVEYSTVPGDNREFLTFSVPNGWDDVKRLTNRVLTYNNKDFTFSGWNSDRNECYFVRLVNGMSFVATIK*
Ga0105746_10045699	F006181	N/A	MKRNLIHVIYPDEAVNSFVMTTDMSTADILERVFAEWNHGSGRECEMFINSKKRSLSVNDIVCVNGTYFQCASFGWHEVSPEYVNALEEAVAQHPSRLDGAWFALSEVMWGRKCVVETV*