NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105745_1301359

Scaffold Ga0105745_1301359


Overview

Basic Information
Taxon OID3300007972 Open in IMG/M
Scaffold IDGa0105745_1301359 Open in IMG/M
Source Dataset NameCoastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location NameOregon, USA
CoordinatesLat. (o)46.2357Long. (o)-123.9153Alt. (m)Depth (m)1.2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009636Metagenome / Metatranscriptome315Y
F019391Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0105745_13013591F009636AGGAMGYFYQDWKEKKMFVENTDGQFVMNFGEAEKSMIQNLEDAVVNITEGASDERRMAVNYLEYLVDCLKKNKVEIKWN
Ga0105745_13013592F019391N/AMTNQETIFISANNGGLEIYKGAGNLIAGNIKTAKTFKYVMDTHNIDIDFDTIYTTSSMDFADKEGFENADDARILMEEGFNLIEMTRMY*

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