Scaffold Ga0105745_1236810

Overview

Basic Information

• Taxon OID: 3300007972
• Scaffold ID: Ga0105745_1236810
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 583
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_12368101	F042184	N/A	FYDLDIEIKAWVEWEYDPDYSPNEGVYDKFIWVDYLQVGNTRIDITDELTPRDSKKIEEQIEESIDDSL*
Ga0105745_12368102	F015970	AGGAG	MTAFNKAKWEAYQGLNDDDIIDAIDGSEAIPLAIKSGDWEYAFQFIKERIDNKMQRRAEFYLYSKTKTPSIDDDDELRTLRTLWLKKNFKGDKDET*