Scaffold Ga0105745_1129245

Overview

Basic Information

• Taxon OID: 3300007972
• Scaffold ID: Ga0105745_1129245
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 762
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004856	Metagenome / Metatranscriptome	421	Y
F035272	Metagenome / Metatranscriptome	172	N
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_11292451	F102056	AGGAGG	MNKEFEKELVELLNKYYSTNWDYVWEFIGDTIETKLWLGEEVEDE*
Ga0105745_11292453	F004856	AGGAGG	MSEWLDGTKPKKIEARYSAYLSWDLDELGIDWDEIEDWDLLRADLHITFKDGTQKVYENWQDLDIDYKHNFEEVLILDEDWHEVEGLN*
Ga0105745_11292455	F035272	N/A	MMTYKQWCDFRELLNILHIEVESKICDVKVEEAFDDVWDMVDEIDTTQEQD*