Scaffold Ga0105745_1004526

Overview

Basic Information

• Taxon OID: 3300007972
• Scaffold ID: Ga0105745_1004526
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3045
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2357
  • Long. (^o): -123.9153
  • Depth (m): 1.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046179	Metagenome	151	Y
F056323	Metagenome	137	Y
F072111	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105745_10045263	F056323	N/A	MADDLKLPPAVVALWAADGMIPHIMREGMPLFDPVAVGKHIAEQLNNLNKYDDGNKPTTN
Ga0105745_10045265	F072111	AGGAGG	MKSQVTLATAIFAHLALFLFVDSSFEGSSKWKMWAFYGSSLLSVAVWAAYVVNDDLDGGGTA*
Ga0105745_10045267	F046179	AGGGGG	MRPQWESKALALITGAGVSTDDAPWVLECIQKAVDDIAEHDDDLQFPLFVEYHANDKAALCNLDAEAFSDVLACLGVDLHRLENLWGRKHIDPPIDEADWLLE*