Scaffold Ga0110931_1174285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0110931_1174285

Scaffold Ga0110931_1174285

Overview

Basic Information
Taxon OID	3300007963 Open in IMG/M
Scaffold ID	Ga0110931_1174285 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	644
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045148	Metagenome	153	Y
F054084	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_11742852	F045148	N/A	MTVPTDWVELTASCGRCSNQDSVSVPAAKYTEWRAGGNISWVFRNLSPQQRDILIGSDTTRPFPYYLCKICWDLTFEGEEE*
Ga0110931_11742853	F054084	AGGAG	MLSHEAQTWNERQERAREYHATEGRALRDIERHLSAIRSLLERLVQHFGVRP*

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