Scaffold Ga0110931_1057009

Overview

Basic Information

• Taxon OID: 3300007963
• Scaffold ID: Ga0110931_1057009
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1179
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F040056	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_10570091	F040056	N/A	ILSLKMEIAGMFTPGATLWRFCPVQTQLDFRLGTLVRWNAGNTGEPEDIDELGIVTQMPGEHWSGNYHISWCTSNTVSHHSPDMVEESLYQRQMEIVG*
Ga0110931_10570093	F012463	GGAG	MKIGDIVKLIAKPQVDWMLNYLDKTFQVLDFPTETGVEVMMVGSRPEWVWIIRKDNLEVSDEAGGHCGDSAQS*
Ga0110931_10570094	F012401	N/A	MSEQPSEDRKMIDGILSLEKAALQRLTEDRIASGSLGEEVEDMLSEAGIYWDTLNDEYFSIDNFQRETFERLAKEYASQDYA*