Scaffold Ga0110931_1042520

Overview

Basic Information

• Taxon OID: 3300007963
• Scaffold ID: Ga0110931_1042520
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1373
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y
F059941	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_10425201	F059941	GGA	MKLGTLVQFAAYGAVMDTGYISSHDEDPEFMWVKCVKMGPQRVRKDHTLLEVLSEAG*
Ga0110931_10425203	F015346	AGGA	MEHRIYNVGELVAVASNRVLGIITKSNYWALDEYLGGEIEFVDVMFGSSVSKQYPVRYLAEL*
Ga0110931_10425204	F021674	GGAG	MERETYNTRLKTNPEDIPLGSLMRVKKHCRKNVTITQNGEYGILAPSINGKHITHDVLFPNGTRCIYMPLNWEVVSYA*
Ga0110931_10425205	F006383	GGAGG	MRDKMWEVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN*
Ga0110931_10425206	F022555	AGGAG	MAITPKFKPGQLVRYGNPAHDLVGLVKSTQFARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS*