Scaffold Ga0110931_1041652

Overview

Basic Information

• Taxon OID: 3300007963
• Scaffold ID: Ga0110931_1041652
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1387
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043965	Metagenome / Metatranscriptome	155	Y
F050424	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_10416521	F043965	AGGAG	MAVSGKVYSKSDFSVGIKNKNATAFETAAANDTAYELLPVINVSAPVLNLVESGEIRSNNAGMIELDIDQFRTTKGGFITMDFEVPAERDMIVRMLSNVLQDHGESGSDPYVHTIQATSGAALSRPDFTGSSSSGIPSLFDIGLYYPESAQDKLITSAVLQSLTMNFDMTD
Ga0110931_10416523	F050424	AGGA	MAIEFENIYKDRVIGTIHKLLKQNLVSIPIVFDEHRGQESFLIVPESDTFIDYASNVHIREFTTTINYQLRKGGEYTKENQLNRLTMVAEIVKRLLFNNRNYESGNITNWYGGQVSSVEYTRDEDDETISNVIITFQCNTNEVIS*