Scaffold Ga0110931_1009595

Overview

Basic Information

• Taxon OID: 3300007963
• Scaffold ID: Ga0110931_1009595
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2963
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001034	Metagenome / Metatranscriptome	798	Y
F007978	Metagenome / Metatranscriptome	341	Y
F008820	Metagenome / Metatranscriptome	327	Y
F081211	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_10095951	F081211	N/A	MNKNLSLVATLVPLIIVAIGLVGWVLSLRSDVTATVGQLEAVQAEVEDVQSRLSEMEKGLAIADDQMRTIMGEHEVIGEMFEQMGEIQPAGER
Ga0110931_10095952	F001034	AGGA	MLASQQVYEDAQYQALAPIGPQEPIPAGVHDIELSWDRKRGYMRVIIDGKTWHFKEYLGKAQVTGCDSKRGRIYLRAMARIDGETLTTYRDPSAEPHSEVEGERRESTHNRLCYRRQSQEWRLRDERMDWNHPEALRFTKNYVGDLNAEWHMADSVAHIYHNGYAIIDENDVAHLYE*
Ga0110931_10095953	F008820	AGGAG	MADLTQYLTAKYNKMIGEISTDLGRTADDLANTQNIIKSLKNPDMLINGLSLTLDMVQVMENGDIRILPPPPAPAITETCVKEPEKNGKKDTKELANVS*
Ga0110931_10095954	F007978	GGAGG	MAITFNTDRLQGLEGTTINGVYGRIQSVIVKKYDAETDPDVAAHFGIMYDVVLHASADKRNAAGEYPQWGNRLRSREIDHFTATVTTDQMNAADANGYTLAYADLKAKLAADSPPKATSIADA*