Scaffold Ga0110931_1006668

Overview

Basic Information

• Taxon OID: 3300007963
• Scaffold ID: Ga0110931_1006668
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3594
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015153	Metagenome / Metatranscriptome	257	Y
F033251	Metagenome	178	N
F064114	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0110931_10066682	F015153	AGGA	MKPQEIFDAASVHLMGMDGPSVDQHGDACVYRGQDDDYEFNGQMCAVGLFIKDEHYDDDLEGQGISGGQAVADAVAASWGQDDLTVAQLSLLADLQNAHDDTSRDDVDSIKSRKWRNGIIDALDGVATKHHLRFDPKGASA*
Ga0110931_10066685	F033251	GAG	LGFGRLARTVLVLVRLKPIERMNVMADKKKRNLTPTKRSMRPWTGKEIDQLLEYKATGFRHNEIGELMGRSTKSINVKISKIRHGVEAANNPVEDLTPFQKNLDSTLFGDVSPDDKPKKPRKPRATKLSLSPKPLVTDTFNVPKKPVYAAVVLVLVIVAWYLGSMS*
Ga0110931_10066689	F064114	N/A	MGKKNMTALEQWKELARVENLRHQLVAQPTQAIVGRNYGAKVDLMAVAFDAVKTRDAWTIKDLARKMQIKDDAAQQLLRSLVKEGHLTSRPMHGEALYEWPDRNPSKPLPRMGSRYR*