Scaffold Ga0079306_1019243

Overview

Basic Information

• Taxon OID: 3300007959
• Scaffold ID: Ga0079306_1019243
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanotroph_Enrichment_5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2358
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5172

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025315	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079306_10192433	F025315	AGGAG	MQNYLLVTCEIIIVIVMPLLALYLKGNWSLRKVIPALMIIPVIWYFTYAPLHELSHAAGTYLVGGKVIDYRLIPRFWLGEFGGAWATPGGFTQSWQQLTSSAFPYLLDIVCLVVAISVFRRGFSRNPFYVGLAFMLLCLRPAFDFVCESIGFLTGWKGDLYNMQQIIGPLAIGSFILISIGLAIYSTSSTLILFVRFSKHENGQYRIGTINSAIQKGATNEHDR*