Scaffold Ga0105741

Basic Information
Taxon OID	3300007956 Open in IMG/M
Scaffold ID	Ga0105741_1013372 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300007956 Open in IMG/M

Scaffold ID

Ga0105741_1013372 Open in IMG/M

Source Dataset Name

Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2092
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2092

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.2335	Long. (^o)	-123.9142	Alt. (m)	Depth (m)	15.1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Oregon, USA

Coordinates

Lat. (^o)

46.2335

Long. (^o)

-123.9142

Alt. (m)

Depth (m)

15.1

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105741_10133721	F041247	AGG	MTNFYSIQADKMKFDLDMLVDLYKTVDQTKWVHRQDKLPQYWPIDENSTFDRNHEFYKLLKENIHADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVISDEEDNDWSKSPVIFIDQFDQVVERVEHTNNTPIIYSANYMHGTIKSLDNTNDRITFVVDIKYWFARVRSKYNNGTLFTNNKAF
Ga0105741_10133722	F061913	GGAG	MVEQGNFFVKCHNIYYNQQWLIDVLDSLKPSDWVNGVSRTGVAWNVSECRNIPYENMWKDIVENLNLDQVGSTERTFHGEKPWAFFSKLPPGGINLHYDHRRWGAILFPVRGKFEVTPQICATENYTEIERFNFTKSKIHNNGTPVFFDSRVLHAVPTPLDLEEERVVFSVNIHSHPTEFFRKAIDGTWLNKNTENIGVSND*
Ga0105741_10133723	F084452	GGAG	MINKLIWNKIEELFYWNISVDSPINQLPFTMEFIVTCQKEFSMTVRDKEYPIHLGGIMDWHDKTMGDFAKEIDKQYQSNYFVAENGTSTTGVVGEIKDVNDKSIANKWNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADVLCSQADFKPANDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTHG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105741_1013372

Overview

Ecosystem & Geography

Associated Families

Sequences