Scaffold Ga0105741_1006482

Overview

Basic Information

• Taxon OID: 3300007956
• Scaffold ID: Ga0105741_1006482
• Source Dataset Name: Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3045
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location

• Location Name: Oregon, USA
• Coordinates
  • Lat. (^o): 46.2335
  • Long. (^o): -123.9142
  • Depth (m): 15.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008247	Metagenome / Metatranscriptome	336	Y
F074736	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105741_10064821	F008247	N/A	MATKKTAIFTLTERLTISASGTDTFAAIDLGSYVDVGDRQALQVHSVDFIFQGNQPASSVTGAMGGTGFVQVQVTDLNRGGLVFANDRALVASGNLEYDTDGFLNNTTDMFPDNFGKG
Ga0105741_10064825	F074736	AGGTGG	MSRTVMFDKVMRGGSFSYTAAGTSWSSNGPWEYAGGNTNVLYTQDEIDIGGMTTTQEETFYPEAATIQNSPFYTVPGVVDRIPGSPELGLVPYGALFEYVLITESPFKVDKWVADQIYTGDGTSWIPVYSCPGIDPRRTTDQATTLGFDNILYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFVVIQPLGGQTIPNGSGIQLPHMRVVLVGSGKEENDLSYIMRLRNSYLLQQDVN*