Scaffold Ga0105739_1072579

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105739_1072579

Scaffold Ga0105739_1072579

Overview

Basic Information
Taxon OID	3300007954 Open in IMG/M
Scaffold ID	Ga0105739_1072579 Open in IMG/M
Source Dataset Name	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	768
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water → Microbial Communities From Columbia River Estuary, Oregon, Usa

Source Dataset Sampling Location
Location Name	Oregon, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9163	Alt. (m)		Depth (m)	9.6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040107	Metagenome	162	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105739_10725792	F090404	GGAG	MKFADVIASLMAGKRVRKTNWESNTAFFLFDKEDNTFVFYEVLDGEECTIQIYTKLTLSPKDLISDFWEIV*
Ga0105739_10725793	F040107	GGAG	MTGIEALSLLKEGKTLRRESWEPHEKCKALDFFGKWIIHLEKAKNNKILDKEIEKIFQNSFAFTKTTFDDFFGLFDKIEAGEFLHDDWQIVE*

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