Scaffold Ga0113553_100356

Overview

Basic Information

• Taxon OID: 3300007925
• Scaffold ID: Ga0113553_100356
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763435843 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34704
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F101359	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0113553_10035613	F047127	N/A	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK*
Ga0113553_10035615	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAIATSSDTQKTSISEKQNAEKIERVIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSRLNNHLNLEK*
Ga0113553_10035616	F040685	N/A	MKKLLFKLFFALTLTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGASEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0113553_10035618	F040685	N/A	MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGMALYSRQYTFNSLKKEFSAKPLMGQKEELPKEVSLPNTPKNWEAFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDMETWYDLLQIIAEEFEKI*
Ga0113553_1003563	F101359	N/A	MKKFLSKRSILVGALALALGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*