Scaffold Ga0111562_100046

Overview

Basic Information

• Taxon OID: 3300007921
• Scaffold ID: Ga0111562_100046
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 1, subject 160704339 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 140066
• Total Scaffold Genes: 177
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (35.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F099406	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111562_100046176	F074964	N/A	MITKKNINRLQNVVIKENASNLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFALYSKVYKDTNADKEKGIEAKTADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESTQQ*
Ga0111562_10004625	F090484	N/A	MIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTNSTFVARRYRVNGIQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIKEAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVRAEQFKEKIENMDIRTQSLPNIGTTVDNDKELDGESVFKDIPFEELSFYNDTYLYSSSQYSSL*
Ga0111562_10004645	F099406	N/A	MAEVGYNSKFEGQEVDSRLENVAQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKEYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDNVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNLVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPASGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA*