Scaffold Ga0111546_101525

Overview

Basic Information

• Taxon OID: 3300007907
• Scaffold ID: Ga0111546_101525
• Source Dataset Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Liverpool
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2317
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location

• Location Name: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F106095	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111546_1015252	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLAGSTYEYVDPGTRLVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSAIVTGEPFGWNGNYVMNDMVTTGQVRNRPVITFTNGTSATRTVDVAVFIGG*
Ga0111546_1015253	F106095	GGCGG	MSFLSNLIKKAAPVVATVAPGTPIGEAARVVTVAQQQQERKYQKKLAIDAQAARQREINNMEFRDTDALNRTIYGNTGGTLPTVRQGFGSSFGTFLGDVGQNILNPLSGLFSQVRPFISQQSVGQPALSTRSTIGGQESQQSGVTQGFMGGFGNLAGQASRFLRTPGGQIGTGLLTGIGASMLSGGNGGMRITRKMKSQYRAVLNLAQGDYDQAAAMIGVSTDQFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK*
Ga0111546_1015254	F003678	N/A	MDQFMLYAPLIIASIALFLCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGSIKNVGG*