Scaffold Ga0111482_1097503

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111482_1097503

Scaffold Ga0111482_1097503

Overview

Basic Information
Taxon OID	3300007906 Open in IMG/M
Scaffold ID	Ga0111482_1097503 Open in IMG/M
Source Dataset Name	Microbial communities from sediment of the River Tyne Estuary, UK ? Live_176d_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Liverpool
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	505
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location
Location Name	United Kingdom
Coordinates	Lat. (^o)	54.9632021	Long. (^o)	-1.6348029	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046309	Metagenome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111482_10975032	F046309	N/A	WDTVATLTGDIGTIKKSIQTLNNRINGMNSPKLNDELLQYAIKQQNGAMTPPSTKLGG*

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