Scaffold Ga0111031_1044887

Overview

Basic Information

• Taxon OID: 3300007900
• Scaffold ID: Ga0111031_1044887
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1693
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011718	Metagenome	288	Y
F088918	Metagenome / Metatranscriptome	109	N
F099146	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111031_10448871	F011718	N/A	IEYVDRWRTDTVRFVSKEFVTVRDTITSEIIINRLDTLFLVDTVSIVEAWLTEIAKYDTTIDQKNASISLNWQNYQNRSENLMVTYTPKKAPLKWALGVHGNAGLLSNFKDSYVPLMGVGLQATVKRGYYGIDYGFNGNHYIGVRVGRNVISR*
Ga0111031_10448872	F099146	N/A	MRASTFICTNIEEIEMVKEENEKLNLPSPQPLPKPTYEESVGWFHIEDVTRAYTRNINNKAVASLVFSDGSYMDVKMTSEMEGVLDVLFRNTL*
Ga0111031_10448873	F088918	N/A	MAYKKKIKLTITDEVYQKMQSRNQLWTREAFDQSEELAGQFKDNIIYMCEKKGVKITEMVRWLNEMGLKFQIRRLYKWGEVHAIYPTLIEITFFSKYFEIDPGRMVSKDLRAVDRLKGVSKKNI*