Scaffold Ga0111031_1019564

Overview

Basic Information

• Taxon OID: 3300007900
• Scaffold ID: Ga0111031_1019564
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1276
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059873	Metagenome	133	N
F075967	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111031_10195643	F059873	AGGAGG	MSINYLTATIKATTDGDFPNNVKQITHAEIHLSVPCEVSKEKEFEKAKDNLLKSVIDMYALEDQHQVDVTIEYQYYGVNE*
Ga0111031_10195644	F075967	N/A	MTFVQAYAKYRAHIIDNEISGLYGVYISEDASKTNGDGAWLLKDIEGYTRAYVDKHGVTRL*