Scaffold Ga0111031_1007042

Overview

Basic Information

• Taxon OID: 3300007900
• Scaffold ID: Ga0111031_1007042
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2176
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F007750	Metagenome	345	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111031_10070422	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTAATRTIRCGVFIGG*
Ga0111031_10070423	F007750	AGGA	MAFLGDFGKFFGLGSSEEVLGDVGEFVAGKPGRYLGEATGRATSNLAGDDGISPVSTADQALEQSAVSVSKRGDVPQELSTMTGTRGMTTQAGFGALSPLISTASRFLGSKSGQLVTGVGTAVGLGGVSFMGTDSRMKPVLTQSRRNKAKVRQLVNFMGIEGTTNFLSQSMNVNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTFIKN*
Ga0111031_10070424	F002374	N/A	MNQVLLYVGLIVASVSFFLCVYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLTYAIKQQNGAMHPPKQDLGG*